When you try to install some application on your server you may remove or damage of some of your installation. Then its better you to re install, rebuild Direct admin with the code below:

Normaly this folder location has files, lets correct this:
Use putty to connect to your server:

Then build DirectAdmin all, it will take serious time to build all.

Then you can see your subfolder as below:


Normaly this folder location has files, lets correct this:
Use putty to connect to your server:

Code:
cd /usr/local/directadmin/custombuild
./build update
./build all d
Then build DirectAdmin all, it will take serious time to build all.

Then you can see your subfolder as below:

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